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Re: List of valid cellular barcodes

Posted By: jens-10x, on Aug 7, 2017 at 11:05 PM

Hi Rory,

 

The 4M-with-alts-february-2016.txt is the barcode whitelist for our Genome application. For the Genome assay we load ~4 million different barcoded Gel Beads. This is different to our Single Cell assay which only uses  ~750k barcoded Gel Beads as input.

 

The barcode whitelist for the Genome application is located here:
longranger-2.1.3/longranger-cs/2.1.3/tenkit/lib/python/tenkit/barcodes/4M-with-alts-february-2016.txt

 

Best,

Jens

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Re: List of valid cellular barcodes

Posted By: rory, on Aug 9, 2017 at 12:15 PM

Thank you! That is super helpful.