10x Single Cell Analysis Tools

Posted By: 10x-admin, on Jan 26, 2017 at 2:50 PM

The Chromium™ Single Cell Software Suite is a complete package for analyzing and visualizing single cell 3’ RNA-seq data produced by the 10x Chromium Platform. The package includes:

  • Cell Ranger™: Pipelines
    A set of analysis pipelines that perform sample demultiplexing, barcode processing, and single cell 3’ gene counting.
  • Cell Ranger: R Kit
    R package for secondary analysis of Cell Ranger matrix data, including PCA and t-SNE projection, and k-means clustering. A user-friendly guided tutorial is also available.
  • Loupe™ Cell Browser
    Quickly and interactively find significant genes, cell types, and substructure within your single cell data, no programming required.