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Clustergrammer: Gene Expression Clustering, Visualization, and Enrichment Analysis in Python

Posted By: cornhundred, on Jun 19, 2018 at 6:28 PM

Clustergrammer is a web-based visualization tool for high dimensional biological data, e.g. scRNA-seq gene expression data. The Python based Clustergrammer-Widget can be used within Jupyter notebooks to process, hierarhically cluster, and interactively visualize gene expresion data. 

 

GitHub: https://github.com/MaayanLab/clustergrammer https://github.com/MaayanLab/clustergrammer-widget

Jupyter notebook bulk gene expression example: Nbviewer notebook link

publication https://www.nature.com/articles/sdata2017151

documentation: http://clustergrammer.readthedocs.io/