Reply
Highlighted

Scanpy - Single-Cell Analysis in Python

Posted By: falexwolf, on Jul 24, 2017 at 8:15 AM

Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includes preprocessing, visualization, clustering, pseudotime and trajectory inference, differential expression testing and simulation of gene regulatory networks. The Python-based implementation efficiently deals with data sets of more than one million cells and enables easy integration of advanced machine learning algorithms.

 

GitHub: http://github.com/theislab/scanpy

PyPI: https://pypi.python.org/pypi/scanpy