Bug when running cellranger reanalyze with barcodes option

Posted By: frank9, on Mar 13, 2018 at 5:08 AM

Hello 10Xers,

      When running cellranger reanalyze with barcodes option to analyze a subset of cells, I encountered following error message:

IndexError: index 29870 is out of bounds for axis 0 with size 29869

      29869 is the number of barcodes I want to analyze. 

      After googling for a while, I guess it's because of array index, so is this a bug in the current version of cell ranger(version 2.1.0)? 






Edited:Finally I figured it out. Since cellranger reanalyze with genes options can only give the differential analysis results of these genes, I once modified the code to report all differential expressed genes, which introduced bugs in the original code. Sorry for that, this post can be closed.