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Is it possible to merge gene expression data from v2 kit and VDJ kit

Posted By: frank9, on Jul 5, 2018 at 12:51 AM

Hello, 10Xers, 

We now have single cell 3’ gene counting with the v2 kit, and 5′ gene expression data from VDJ kit. Gene expression of both samples was generated with cellranger count. Is it possible to merge the 3' and 5' gene expression data with cellranger aggr option?

 

Yours,

Frank 

2 Replies

Re: Is it possible to merge gene expression data from v2 kit and VDJ kit

Posted By: Leah, on Jul 5, 2018 at 9:15 AM

 

Hi Frank, 

To address your question, I hope the following Q&A article helps:

Combine gene expression data from 3' and 5' assay chemistries 

 

Best,

Leah

Re: Is it possible to merge gene expression data from v2 kit and VDJ kit

Posted By: frank9, on Jul 6, 2018 at 12:42 AM

Thanks, Leah, that is helpful!

 

Yours,

Frank