Low UMI count of a sample
I have recently obtained single cell RNA sequencing data through 10X genomics technology for 4 of my mice primary samples. The median UMI counts per cell obtained post cellranger count for each of the samples is 8270, 6266, 7488 and 2753. I am wondering whether particularly low UMI count for one of the samples can potentially affect my downstream analysis in any sense? If yes, is there a way I can think of resolving this issue? Please share your experiences in this regard.
Thank you so much.