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What is the normalization algorithm cellranger use for analysis before the PCA and clustering?

Posted By: katherinehuang, on Jul 6, 2018 at 1:29 PM
 

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Re: What is the normalization algorithm cellranger use for analysis before the PCA and clustering?

Posted By: Leah, on Jul 9, 2018 at 7:48 AM

Hello Katherine,

Hope the following answers your question:

How are the UMI counts normalized before PCA and differential expression?

 

Best,