Supernova sample parmameter
I have 10x data from one sample over three different libraries, all located in the same directory. When I run Supernova 2.0.1 I get the following error:
The --sample argument must be specified if multiple samples were demultiplexed in a run folder. Options: PRO2044_S1_Steppe_LIB36621 PRO2044_S1_Steppe_LIB36622 PRO2044_S1_Steppe_LIB36623
But, the help page states that by default, all samples are used:
|--sample||(optional) Can be used to select only a single sample of those specified in the sample sheet supplied to mkfastq. By default, all samples are used.|
I managed to get around this by specifying:
in my Supernova script, but I wonder why it's described as optional in the docs, but turns out to be mandatory in the code.
The Earlham Institute, Norwich, UK